NAGIOS: RODERIC FUNCIONANDO

EvalMSA: a Program to Evaluate Multiple Sequence Alignments and Detect Outliers

Repositori DSpace/Manakin

IMPORTANT: Aquest repositori està en una versió antiga des del 3/12/2023. La nova instal.lació está en https://roderic.uv.es/

EvalMSA: a Program to Evaluate Multiple Sequence Alignments and Detect Outliers

Mostra el registre parcial de l'element

dc.contributor.author Chiner Oms, Álvaro
dc.contributor.author González Candelas, Fernando
dc.date.accessioned 2017-02-17T16:04:17Z
dc.date.available 2017-02-17T16:04:17Z
dc.date.issued 2016
dc.identifier.citation Chiner-Oms, Alvaro González Candelas, Fernando 2016 EvalMSA: a Program to Evaluate Multiple Sequence Alignments and Detect Outliers Evolutionary Bioinformatics 12 277 284
dc.identifier.uri http://hdl.handle.net/10550/57211
dc.description.abstract We present EvalMSA, a software tool for evaluating and detecting outliers in multiple sequence alignments (MSAs). This tool allows the identification of divergent sequences in MSAs by scoring the contribution of each row in the alignment to its quality using a sum-of-pair-based method and additional analyses. Our main goal is to provide users with objective data in order to take informed decisions about the relevance and/or pertinence of including/retaining a particular sequence in an MSA. EvalMSA is written in standard Perl and also uses some routines from the statistical language R. Therefore, it is necessary to install the R-base package in order to get full functionality. Binary packages are freely available from http://sourceforge.net/projects/evalmsa/ for Linux and Windows.
dc.language.iso eng
dc.relation.ispartof Evolutionary Bioinformatics, 2016, vol. 12, p. 277-284
dc.subject Programes d'ordinador
dc.subject Biologia
dc.title EvalMSA: a Program to Evaluate Multiple Sequence Alignments and Detect Outliers
dc.type journal article es_ES
dc.date.updated 2017-02-17T16:04:17Z
dc.identifier.doi 10.4137/EBO.S40583
dc.identifier.idgrec 116213
dc.rights.accessRights open access es_ES

Visualització       (773.9Kb)

Aquest element apareix en la col·lecció o col·leccions següent(s)

Mostra el registre parcial de l'element

Cerca a RODERIC

Cerca avançada

Visualitza

Estadístiques