Conformation and concerted dynamics of the integrin-binding site and the C-terminal region of echistatin revealed by homonuclear NMR
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Monleon Salvado, Daniel; Esteve Moya, Vicent; Calvete Chornet, Julio; Celda Muñoz, Bernardo; Kovacs, Helena
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Aquest document és un/a article, creat/da en: 2005
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Echistatin is a potent antagonist of the integrins αvβ3, α5β1 and
αIIbβ3. Its full inhibitory activity depends on an RGD (Arg-Gly-
Asp) motif expressed at the tip of the integrin-binding loop and on
its C-terminal tail. Previous NMR structures of echistatin showed
a poorly defined integrin-recognition sequence and an incomplete
C-terminal tail, which left the molecular basis of the functional
synergy between the RGD loop and the C-terminal region unresolved.
We report a high-resolution structure of echistatin and
an analysis of its internal motions by off-resonance ROESY
(rotating-frame Overhauser enhancement spectroscopy). The fulllength
C-terminal polypeptide is visible as a β-hairpin running
parallel to the RGD loop and exposing at the tip residues Pro43,
His44 and Lys45. The side chains of the amino acids of the RGD
motif have well-defined conformations. The integrin-binding loop
displays an overall movement with maximal amplitude of 30◦.
Internal angular motions in the 100–300 ps timescale indicate
increased flexibility for the backbone atoms at the base of the integrin-
recognition loop. In addition, backbone atoms of the
amino acids Ala23 (flanking the R24GD26 tripeptide) and Asp26
of the integrin-binding motif showed increased angular mobility,
suggesting the existence of major and minor hinge effects at the
base and the tip, respectively, of the RGD loop. A strong network
of NOEs (nuclear Overhauser effects) between residues of the
RGD loop and the C-terminal tail indicate concerted motions
between these two functional regions. A full-length echistatin–
αvβ3 docking model suggests that echistatin’s C-terminal amino
acids may contact αv-subunit residues and provides new insights
to delineate structure–function correlations.
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