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Genomic-scale analysis of DNA words of arbitrary length by parallel computation.

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Genomic-scale analysis of DNA words of arbitrary length by parallel computation.

dc.contributor.author	Yang, X. Y.
dc.contributor.author	Ripoll, A.
dc.contributor.author	Arnau Llombart, Vicente
dc.contributor.author	Marín Lozano, Ignacio
dc.contributor.author	Luque, E.
dc.date.accessioned	2015-12-16T12:51:46Z
dc.date.available	2015-12-16T12:51:46Z
dc.date.issued	2006
dc.identifier.citation	Yang, X. Y. Ripoll, A. Arnau Llombart, Vicente Marín Lozano, Ignacio Luque, E. 2006 Genomic-scale analysis of DNA words of arbitrary length by parallel computation. NIC SERIES 33 623 630
dc.identifier.uri	http://hdl.handle.net/10550/49537
dc.description.abstract	In the post-genomic era, one of the main tasks is deciphering the meaning of the DNA sequences of complex organisms. In order to do so, there is a clear need for biocomputer tools able to extract and order the information of long DNA molecules, such as whole chromosomes or even complete genomes. However, most genomic analyses have been concentrated on the detection and counting of short words having sizes of between 1 and 10 nucleotides. In this paper, we describe parallel algorithms with different complexities that exhaustively determine all words of size k, k being arbitrarily large, in a source DNA sequence. The results shown that our algorithms achieve a high degree of scalability, allowing the detection of DNA words of 64 nucleotides in only 800 seconds.
dc.language.iso	eng
dc.relation.ispartof	NIC SERIES, 2006, vol. 33, p. 623-630
dc.subject	Genètica
dc.subject	Genòmica
dc.subject	ADN
dc.title	Genomic-scale analysis of DNA words of arbitrary length by parallel computation.
dc.type	journal article	es_ES
dc.date.updated	2015-12-16T12:51:47Z
dc.identifier.idgrec	035520
dc.rights.accessRights	open access	es_ES