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CoproID predicts the source of coprolites and paleofeces using microbiome composition and host DNA content

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CoproID predicts the source of coprolites and paleofeces using microbiome composition and host DNA content

dc.contributor.author	Borry M.
dc.contributor.author	Cordova B.
dc.contributor.author	Perri A.
dc.contributor.author	Wibowo M.C.
dc.contributor.author	Prasad Honap T.
dc.contributor.author	Ko J.
dc.contributor.author	Yu J.
dc.contributor.author	Britton K.
dc.contributor.author	Girdland-Flink L.
dc.contributor.author	Power R.C.
dc.contributor.author	Stuijts I.
dc.contributor.author	Salazar García, Domingo Carlos
dc.contributor.author	Hofman C.
dc.contributor.author	Hagan R.
dc.contributor.author	Samdapawindé Kagoné T.S.
dc.contributor.author	Meda N.
dc.contributor.author	Carabin H.
dc.contributor.author	Jacobson D.
dc.contributor.author	Reinhard K.
dc.contributor.author	Lewis C.M.
dc.contributor.author	Kostic A.
dc.contributor.author	Jeong C.
dc.contributor.author	Herbig A.
dc.contributor.author	Hübner A.
dc.contributor.author	Warinner C.
dc.date.accessioned	2020-04-21T12:02:28Z
dc.date.available	2020-04-21T12:02:28Z
dc.date.issued	2020
dc.identifier.citation	Borry M. Cordova B. Perri A. Wibowo M.C. Prasad Honap T. Ko J. Yu J. Britton K. Girdland-Flink L. Power R.C. Stuijts I. Salazar García, Domingo Carlos Hofman C. Hagan R. Samdapawindé Kagoné T.S. Meda N. Carabin H. Jacobson D. Reinhard K. Lewis C.M. Kostic A. Jeong C. Herbig A. Hübner A. Warinner C. 2020 CoproID predicts the source of coprolites and paleofeces using microbiome composition and host DNA content Peerj 8 1 23
dc.identifier.uri	https://hdl.handle.net/10550/73965
dc.description.abstract	Shotgun metagenomics applied to archaeological feces (paleofeces) can bring new insights into the composition and functions of human and animal gut microbiota from the past. However, paleofeces often undergo physical distortions in archaeological sediments, making their source species difficult to identify on the basis of fecal morphology or microscopic features alone. Here we present a reproducible and scalable pipeline using both host and microbial DNA to infer the host source of fecal material. We apply this pipeline to newly sequenced archaeological specimens and show that we are able to distinguish morphologically similar human and canine paleofeces, as well as non-fecal sediments, from a range of archaeological contexts.
dc.language.iso	eng
dc.relation.ispartof	Peerj, 2020, vol. 8, p. 1-23
dc.subject	Arqueologia Metodologia
dc.title	CoproID predicts the source of coprolites and paleofeces using microbiome composition and host DNA content
dc.type	journal article	es_ES
dc.date.updated	2020-04-21T12:02:29Z
dc.identifier.doi	10.7717/peerj.9001
dc.identifier.idgrec	137942
dc.rights.accessRights	open access	es_ES